神经药理学报 ›› 2021, Vol. 11 ›› Issue (6): 17-.DOI: 10.3969/j.issn.2095-1396.2021.06.003

• 研究论文 • 上一篇    下一篇

脐带间充质干细胞治疗乳腺癌核心靶点的预测

尤斯涵,郭春燕   

  1. 河北北方学院药学系,张家口,075000,中国
  • 出版日期:2021-12-26 发布日期:2021-12-26
  • 通讯作者: 郭春燕,教授,硕士生导师;研究方向:体内药物分析和靶向药物分析;E-mail:guochy0311@163.com
  • 作者简介:尤斯涵,研究方向:网络药理学;E-mail:478032008@qq.com
  • 基金资助:
    2020 年河北省大学生创新创业训练计划项目(No.202010092003)

Prediction of Core Targets of Umbilical Cord Mesenchymal Stem Cells for Breast Cancer Treatment

YOU Si-han,GUO Chun-yan   

  1. Department of Pharmacy,Hebei North University,Zhangjiakou,075000,China
  • Online:2021-12-26 Published:2021-12-26

摘要:

目的:利用网络数据库和生物信息学技术平台,分析脐带间充质干细胞(umbilical cord mesenchymal stem cells,UC-MSCs)治疗乳腺癌疾病(breast cancer,BC)的数据,预测UC-MSCs 治疗乳腺癌的核心靶点。方法:从 NCBI(www.ncbi.com.cn)中的GEO 数据库搜索UC-MSCs 治疗BC 的原始数据集GSE64827,利用R 软件对其数据进行标准化处理得出差异基因。使用STRING 数据库进行蛋白- 蛋白相互作用网络分析和拓扑分析,利 用DAVID 在线工具和R 软件对相关基因进行GO 富集分析和KEGG 通路分析。结果:利用R 软件筛出11 个差异基因,做其蛋白- 蛋白相互作用(置信度大于或等于0.7 的相关基因)网络分析和拓扑分析,提示ALDOC、IGFBP3、DDIT4 和PFKFB4 这4 个基因的关联度较高。GO 分析注释得到了3 条生物过程,分别是果糖代谢过程、糖酵解过程和缺氧反应过程,涉及的主要基因为PFKFB4、ALDOC、DDIT4 和CA9。KEGG 通路分析得到一条果糖和甘露糖代谢通路,涉及基因为ALDOC、PFKFB4。结论:本研究利用网络数据库和生物信息学技术平台预测UC-MSCs 治疗乳腺癌核心靶点有ALDOC、PFKFB4 和DDIT4。

关键词: 脐带间充质干细胞, 乳腺癌, 网络药理学, 生物信息学

Abstract:

Objective:Using network databases and bioinformatics technology platforms,analyze the data of Umbilical cord mesenchymal stem cells (UC-MSCs) in the treatment of breast cancer (BC),and predict the core target of UC-MSCs in the treatment of BC. Methods:Use the GEO database in NCBI (www.ncbi.com.cn) to search the original data set GSE64827 of UC-MSCs treatment of BC. Then use R software to standardize the data to obtain differential genes;use STRING database to perform protein-protein interaction function network analysis and topology analysis,use DAVID online tools and R software to carry out GO enrichment analysis and KEGG pathway analysis of related genes. Results:Using R software to screen out 11 differential genes,do network analysis and topological analysis of their protein-protein interactions (relevant genes with confidence greater than or equal to 0.7),suggesting the association degree of ALDOC,IGFBP3,DDIT4 and PFKFB4 is higher. GO analysis and annotation obtained 3 biological processes,namely fructose metabolism process,glycolysis process and hypoxia reaction process. The main genes involved are PFKFB4,ALDOC,DDIT4 and CA9. KEGG pathway analysis yielded a fructose and mannose metabolic pathway,involving genes ALDOC and PFKFB4. Conclusion:This study uses network databases and bioinformatics technology platforms to predict that the core targets of UC-MSCs for breast cancer treatment are ALDOC,PFKFB4 and DDIT4.

Key words: umbilical cord mesenchymal stem cells, breast cancer, network pharmacology, bioinformatics clinical trials

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